PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DL_C8198CD4A.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 173aa    MW: 17282.2 Da    PI: 4.6699
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DL_C8198CD4A.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.66.9e-063312255
                           HHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH 22 eLrellPkaskapskKlsKaeiLekAveYIksLq 55
                            L+el+P+a      K +Ka++L + ++Y+k Lq
  Traes_6DL_C8198CD4A.1  3 ALQELVPSA-----NKTDKASMLDEIIDYVKFLQ 31
                           79******8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.484130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-10140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.23E-6135No hitNo description
SuperFamilySSF474593.93E-9240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MKALQELVPS ANKTDKASML DEIIDYVKFL QLQVKVLSMS RLGGAAAVGP LVAGLSSESS  60
GNGNGTSSSG DGNGDDDNGG STLRATEQQV ARLMEEDMGT AMQYLQGKGL CLMPISLASV  120
ISSATSSSLR SATRPAGNAG GPLHEGGSPA SPRLVNGGVG ADGSRTIGDG GGQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3742250.0AK374225.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3058A22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452977.16e-73hypothetical protein SORBIDRAFT_04g035890
SwissprotQ9LSQ35e-56BH082_ARATH; Transcription factor bHLH82
TrEMBLW5GZI31e-119W5GZI3_WHEAT; Uncharacterized protein
STRINGMLOC_49032.11e-102(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.16e-34LJRHL1-like 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]